A multi-tissue single-cell tumor microenvironment atlas
b617ee1b-f8c8-4de9-b82b-e803ab93550d
391,963
3f7c572c-cd73-4b51-a313-207c7f20f188
Adult duodenum
ee195b7d-184d-4dfa-9b1c-51a7e601ac11
5,200
dfc09a93-bce0-4c77-893d-e153d1b7f9fa
All
13149914-ea03-4f01-8bf6-b793b667127b
1,665,937
4d8fed08-2d6d-4692-b5ea-464f1d072077
All annotated cells from infection 3
7b55fe5c-d5c8-48e0-a1a3-54c5b9074f3f
125,530
2a9a17c9-1f61-4877-b384-b8cd5ffa4085
All cell types of human eye
e6dad530-418b-47f9-af6e-472e56a7b314
100,055
939769a8-d8d2-4d01-abfc-55699893fd49
All cells from human liver dataset
e84f2780-51e8-4cfa-8aa0-13bbfef677c7
167,598
74e10dc4-cbb2-4605-a189-8a1cd8e44d8c
All major cell types in adult human retina
0129dbd9-a7d3-4f6b-96b9-1da155a93748
244,474
af893e86-8e9f-41f1-a474-ef05359b1fb7
An integrated cell atlas of the human lung in health and disease (full)
9f222629-9e39-47d0-b83f-e08d610c7479
2,282,447
6f6d381a-7701-4781-935c-db10d30de293
Bronchial scRNA-Seq Dataset
d2bc2703-a9b5-4949-b85d-61da7b9961b1
2,075
af500bec-a5d6-4569-9f50-4314f2e7a011
Cellular and transcriptional diversity over the course of human lactation
0920bcb8-4b3a-4e9d-a353-56f529fd3b32
48,478
e77163ca-8214-4e86-8b37-4f65a2ddae13
Central Cornea
a4157949-6f2a-40e2-b960-63f6e2bde918
37,485
63d03351-06be-478e-a0db-f7a653b6b19b
Developing Human Atlas
9968be68-ab65-4a38-9e1a-c9b6abece194
155,232
dfc09a93-bce0-4c77-893d-e153d1b7f9fa
Dissection: Amygdaloid complex (AMY) - basolateral nuclear group (BLN) - basomedial nucleus (accessory basal nucleus) - BM
4593c820-512d-4805-a10f-c0b864a7cc8c
31,090
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Amygdaloid complex (AMY) - corticomedial nuclear group - CMN
1185a7d3-a9c1-4280-9ba5-d61895b15cac
38,331
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Basal forebrain (BF) - septal nuclei - SEP
70e4f35b-c98c-45a1-9aa9-2053b07315dd
40,815
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Basal nuclei (BN) - Body of the Caudate - CaB
529bb209-9d7b-44da-bfa4-f6e4745c46c2
32,678
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Basal nuclei (BN) - Globus pallidus (GP) - External segment of globus pallidus - GPe
18500fcd-9960-49cb-8a8e-7d868dc14efe
50,830
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Basal nuclei (BN) - Globus pallidus (GP) - Internal segment of globus pallidus - GPi
ca20e2ac-5676-4158-b5d0-0c2b15898b19
33,968
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Body of hippocampus (HiB) - Rostral CA1-CA3
182f6a56-7360-4924-a74e-1772e07b3031
28,724
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebellum (CB) - Cerebellar Vermis - CBV
4976b234-9028-4b4b-8a2f-8ac59d636219
71,874
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebellum (CB) - Cerebellar deep nuclei - CbDN
095940cb-7422-4510-96e2-cbafd961eb88
52,045
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Caudal cingulate gyrus (CgGC) - A23
e5b1115b-a486-49bb-bda3-8261822836e0
35,359
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Cingulate gyrus, retrosplenial (CgGrs) - A29-A30
a84face4-eb30-4f43-994f-c6a13a097808
34,078
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Cingulate gyrus, rostral (CgGr) - Ventral division of MFC - A24
3f31f8ce-bbf6-4df8-8203-aa240ed03026
32,157
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Inferior frontal gyrus (IFG) - Ventrolateral prefrontal cortex - A44-A45
6ed0bb6c-a9e3-4ba6-9436-7c8fd4e206f0
38,259
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Inferior temporal gyrus - ITG
1cf24082-59de-4029-ac81-6e398768af3a
29,522
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Middle Temporal Gyrus - MTG
e1f595f6-ba2c-495e-9bee-7056f116b1e4
107,301
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Middle frontal gyrus (MFG) - A46
db1d2c1b-2ee1-45d5-9d53-69a327cd77e6
31,065
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Occipitotemporal (fusiform) gyrus, temporal part (FuGt) - Temporal area TF
f8dda921-5fb4-4c94-a654-c6fc346bfd6d
31,899
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Parietal operculum (PaO) - Gustatory cortex - A43
7db0c178-b0a4-442f-ba54-e9e1633a84bb
42,834
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Precentral gyrus (PrCG) - Primary motor cortex - M1C
f32c2c13-bb1a-4ffd-a457-60b64ecfa4cb
116,576
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Supramarginal gyrus (SMG) - A40
d288b10a-643e-44bd-b451-96e9588b2ee5
39,053
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Supraparietal lobule (SPL) - Posterosuperior (dorsal) parietal cortex - A5-A7
639ffc23-14db-4060-9027-3c90314200f8
35,290
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Claustrum - Cla
31f04740-c712-4c4b-a3f8-55c0506b3034
40,165
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Epithalamus - ETH
93131426-0124-4ab4-a013-9dfbcd99d467
24,327
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Head of hippocampus (HiH) - Tail of Hippocampus (HiT) - Subicular cortex - Sub
19b21f40-db42-4a71-a0d6-913e83b17784
41,568
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Head of hippocampus (HiH) - Uncal CA1
acae7679-d077-461c-b857-ee6ccfeb267f
39,147
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Head of hippocampus (HiH) - Uncal CA1-CA3
3f56901c-dd4a-47d6-b60b-7b0c0111cfb2
37,911
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Head of hippocampus (HiH) - Uncal DG-CA4
4724c395-0c46-46d2-81f7-60fd271fb488
35,350
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Hypothalamus (HTH) - mammillary region of HTH (HTHma) - mammillary nucleus - MN
5bc23cb2-8cfc-4960-bab1-c3027fbeefc4
28,155
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Hypothalamus (HTH) - preoptic region of HTH - HTHpo (medial preoptic nucleus, MPN) - supraoptic region of HTH - HTHso (paraventricular nucleus, PV)
03d38670-1444-4001-bc53-9936e61d9b20
20,027
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Midbrain (M) - Substantia Nigra, Red Nucleus, and nearby nuclei - SN-RN
9ec34295-ab16-47e2-af33-b884143e520b
49,110
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Myelencephalon (medulla oblongata) (Mo) - afferent nuclei of cranial nerves in medulla oblongata - MoAN
07b1d7c8-5c2e-42f7-9246-26f746cd6013
27,210
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Myelencephalon (medulla oblongata) (Mo) - medullary reticular formation (MoRF) & efferent nuclei of cranial nerves in the medulla oblongata (MoEN) - MoRF-MoEN
f9034091-2e8f-4ac6-9874-e7b7eb566824
23,120
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Myelencephalon (medulla oblongata) (Mo) - precerebellar nuclei (PrCbN) - inferior olive - IO
1a018108-b4b6-457b-ba15-046d5e98c169
21,534
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Paleocortex (PalCx) - Anterior Olfactory Nucleus - AON
f502c312-05dc-4fd4-a762-92a63e92b539
31,230
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Pons (Pn) - Pontine Nucleus - PN
64f4ad90-a422-400a-944d-4ce0f39594a7
33,641
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Pons (Pn) - Pontine reticular formation (PnRF) - parabrachial nuclei - PB
f3565fda-499a-4d20-bd92-563c09954c42
24,155
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Pons (Pn) - Pontine reticular formation - PnRF
7c1c3d47-3166-43e5-9a95-65ceb2d45f78
49,512
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Pons (Pn) - afferent nuclei of cranial nerves in pons - PnAN
77044335-0ac5-4406-9b3f-8cdd3656d67b
23,349
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Pons (Pn) - efferent nuclei of cranial nerves in pons - PnEN
900fdf13-150d-4695-9f8c-4c09105ba2eb
47,416
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Pons (Pn) - other nuclei in pontine tegmentum (XPnTg) - dorsal tegmental nucleus - DTg
7cd3c321-e487-4b51-a8af-9bf671b59fe5
26,095
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Spinal cord - SpC
090da8ea-46e8-40df-bffc-1f78e1538d27
24,190
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Tail of Hippocampus (HiT) - Caudal Hippocampus - CA4-DGC
9f499d32-400d-4c42-ac9a-fb1481844fee
56,367
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - Lateral nuclear complex (LNC) - ventral anterior nucleus of thalamus - VA
ed11cc3e-2947-407c-883c-c53b043917c3
8,573
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - Lateral nuclear complex of thalamus (LNC) - ventral group of lateral nucleus - VLN
a7b4f565-691d-43ea-bf4a-d2d1d52bb4b4
27,111
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - Subthalamic nucleus and nearby - STH
a5b5d1f3-dd8b-44f6-a685-15f0f741c062
20,162
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - intralaminar nuclear complex (ILN) - posterior group of intralaminar nuclei (PILN) - centromedian and parafasicular nuclei - CM and Pf
367b55f4-d543-49aa-90e8-4765fcb8c687
24,354
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - lateral nuclear complex of thalamus (LNC) - Pulvinar of thalamus - Pul
ecd9230d-c571-4dab-abd3-8b54c74833f0
46,453
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - lateral nuclear complex of thalamus (LNC) - lateral posterior nucleus of thalamus + ventral posterior lateral nucleus - LP + VPL
fbf173f9-f809-4d84-9b65-ae205d35b523
17,660
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - lateral nuclear complex of thalamus (LNC) - lateral posterior nucleus of thalamus - LP
381aa407-317a-40ef-8048-7ce0eacc4266
26,172
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - lateral nuclear complex of thalamus (LNC) - ventral posterior lateral nucleus - VPL
f6d9f2ad-5ec7-4d53-b7f0-ceb0e7bcd181
6,877
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - posterior nuclear complex of thalamus (PoN) - lateral geniculate nucleus (LG)
d2514440-d747-4d8d-b2c7-b58ef8b71fbe
48,856
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Thalamus (THM) - posterior nuclear complex of thalamus (PoN) - medial geniculate nuclei (MG)
adda0684-f8ea-4403-b393-2a25607077c4
14,226
283d65eb-dd53-496d-adb7-7570c7caa443
Fallopian tube RNA
90d4a63b-5c02-43eb-acde-c49345681601
60,574
d36ca85c-3e8b-444c-ba3e-a645040c6185
Fovea - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
babbf9f3-f482-45a5-ba76-c41f4c2f503e
19,768
2f4c738f-e2f3-4553-9db2-0582a38ea4dc
HBCC_Cohort
5c97eeeb-7e52-44b3-b010-b832b1f5424c
1,486,324
84ce6837-548d-4a1f-919f-0bc0d9a3952f
Human Astrocytes 10x scRNA-seq
07760522-707a-4a1c-8891-dbd1226d6b27
33,506
b0f0b447-ac37-45b0-b1bf-5c0b7d871120
Human Microglia 10x scRNA-seq
f8d8b443-bca6-4c3c-9042-669dfb7f8030
33,041
b0f0b447-ac37-45b0-b1bf-5c0b7d871120
Human Non-DA Neurons 10x scRNA-seq
251b1a7e-d050-4486-8d50-4c2619eb0f46
91,479
b0f0b447-ac37-45b0-b1bf-5c0b7d871120
Human Nurr-Negative Nuclei 10x scRNA-seq
dea1aa78-c0a2-413f-b375-f91cce49e4d0
104,097
b0f0b447-ac37-45b0-b1bf-5c0b7d871120
Human Nurr-Positive Nuclei 10x scRNA-seq
92161459-9103-4379-ae34-73a38eee1d1d
80,576
b0f0b447-ac37-45b0-b1bf-5c0b7d871120
Human OPC Cells 10x scRNA-seq
4dd1cd23-fc4d-4fd1-9709-602540f3ca6f
13,691
b0f0b447-ac37-45b0-b1bf-5c0b7d871120
Human Oligodendrocytes 10x scRNA-seq
5829c7ba-697f-418e-8b98-d605b192dc48
178,815
b0f0b447-ac37-45b0-b1bf-5c0b7d871120
Human dermal fibroblast atlas
a19d1667-a7b5-4556-9e5f-f9bfa690c0f1
108,440
3c4f0970-7614-43de-beb7-6128b3cb74ed
Human pancreatic islet cells
3294d050-6eeb-4a00-b24c-71aacc9b777f
26,474
0a77d4c0-d5d0-40f0-aa1a-5e1429bcbd7e
Infant human neocortex cells
82f6af6d-5313-439a-9936-5e844be49a70
51,878
e02201d7-f49f-401f-baf0-1eb1406546c0
Intra- and Inter-cellular Rewiring of the Human Colon during Ulcerative Colitis
4dd00779-7f73-4f50-89bb-e2d3c6b71b18
34,772
33d19f34-87f5-455b-8ca5-9023a2e5453d
Iris
9a281de7-cee5-4e80-8584-1929f46f152f
57,422
63d03351-06be-478e-a0db-f7a653b6b19b
Lung
2f132ec9-24b5-422f-9be0-ccef03b4fe28
39,778
6ff3401b-d72c-4940-a00c-3f0792397082
MSSM_Cohort
37a17b78-4864-4a42-b67b-31c00962795a
4,140,453
84ce6837-548d-4a1f-919f-0bc0d9a3952f
Midgestational human neocortex cells
39ed7d98-676d-4b8d-9d0a-0f3b60914ead
118,647
e02201d7-f49f-401f-baf0-1eb1406546c0
Organoid - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
7e7f63c5-d964-40be-83de-ecbcccafd233
43,857
2f4c738f-e2f3-4553-9db2-0582a38ea4dc
Ovary RNA
d1207c81-7309-43a7-a5a0-f4283670b62b
26,134
d36ca85c-3e8b-444c-ba3e-a645040c6185
Pancreas
31f657dc-1875-4c4b-a5ca-ce63b3ef3a82
121,916
854c0855-23ad-4362-8b77-6b1639e7a9fc
Periphery - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
ccfdcad0-7104-46b9-addf-fd66a2a15907
34,723
2f4c738f-e2f3-4553-9db2-0582a38ea4dc
RADC_Cohort
5e57cd50-8e42-42d6-940d-5c1660d06864
693,682
84ce6837-548d-4a1f-919f-0bc0d9a3952f
Retina
d5c67a4e-a8d9-456d-a273-fa01adb1b308
19,694
3472f32d-4a33-48e2-aad5-666d4631bf4c
Retina
af8b241a-c72c-4470-b1a4-80e7336c6ab6
4,335
f8057c47-fcd8-4fcf-88b0-e2f930080f6e
Retinal ganglion cells in human retina
aad97cb5-f375-45ef-ae9d-178e7f5d5180
11,617
af893e86-8e9f-41f1-a474-ef05359b1fb7
Single cell RNA sequencing of follicular lymphoma
99950e99-2758-41d2-b2c9-643edcdf6d82
137,147
968834a0-1895-40df-8720-666029b3bbac
Single cell RNA-seq of human heart cells
2e9d2f32-4cfb-49b5-b990-cbf4c241214e
49,359
20eea6c8-9d64-42c9-9b6f-c11b5249e0e9
Single cell transcriptomic profiling identifies molecular phenotypes of newborn human lung cells
6e00ccf7-0749-46ef-a999-dba785630d52
5,499
28e9d721-6816-48a2-8d0b-43bf0b0c0ebc
Single-cell atlas of peripheral immune response to SARS-CoV-2 infection
456e8b9b-f872-488b-871d-94534090a865
44,721
a72afd53-ab92-4511-88da-252fb0e26b9a
Single-cell sequencing links multiregional immune landscapes and tissue-resident T cells in ccRCC to tumor topology and therapy efficacy
bd65a70f-b274-4133-b9dd-0d1431b6af34
167,283
3f50314f-bdc9-40c6-8e4a-b0901ebfbe4c
Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming
124744b8-4681-474a-9894-683896122708
15,457
c353707f-09a4-4f12-92a0-cb741e57e5f0
Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease
01209dce-3575-4bed-b1df-129f57fbc031
51,876
24d42e5e-ce6d-45ff-a66b-a3b3b715deaf
TI epithelial
fe4b89d5-461e-440c-a5a8-621b37b122c0
154,136
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
TI immune
a37f857c-779f-464e-9310-3db43a1811e7
201,072
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
TI stromal
0f4865d5-8000-4f68-8ac7-f5efea9e5e70
75,695
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
Tabula Sapiens - All Cells
53d208b0-2cfd-4366-9866-c3c6114081bc
1,136,218
e5f58829-1a66-40b5-a624-9046778e74f5
Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19: Adaptive Cells
21d3e683-80a4-4d9b-bc89-ebb2df513dde
246,964
ed9185e3-5b82-40c7-9824-b2141590c7f0
Time-resolved Systems Immunology Reveals a Late Juncture Linked to Fatal COVID-19: Innate Cells
30cd5311-6c09-46c9-94f1-71fe4b91813c
125,117
ed9185e3-5b82-40c7-9824-b2141590c7f0
Transcriptome of human posterior ocular segment
9f1a899f-05a0-44c5-8aa9-39df61ae4324
139,978
7855daa4-3f34-4aae-b65a-87720c02e7cd
UMAP visualization of all 12 datasets
de94c504-4b58-4f42-b68d-74a8e4892f0e
15,243
6d203948-a779-4b69-9b3f-1ee1dadc3980
all cells
cff99df2-4904-44f7-9173-ff837f95606e
424,528
0d35c0fd-ef0b-4b70-bce6-645a4660e5fa
colon epithelial
5ce42b38-d867-487f-9b40-e8bb00b21d0b
97,788
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
colon immune
518d9049-2a76-44f8-8abc-1e2b59ab5ba1
152,509
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
colon stromal
6cf3634d-e911-44ad-bf52-c747a9af3c01
39,433
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
multiplexed scRNA-seq of 1.2 million PBMCs from adult lupus samples
218acb0f-9f2f-4f76-b90b-15a4b7c7f629
1,263,676
436154da-bcf1-4130-9c8b-120ff9a888f2