3-prime FGID data
6ceeaa86-9ceb-4582-b390-6d4dd6ff0572
89,849
a064d795-3b77-44ae-9fb5-beb57c567443
49 years old male - Fresh PBMCs (2 days post-intubation)
db59611b-42de-4035-93aa-1ed39f38b467
11,574
29f92179-ca10-4309-a32b-d383d80347c1
49 years old male - Fresh PBMCs (3 days post-intubation)
eeacb0c1-2217-4cf6-b8ce-1f0fedf1b569
9,337
29f92179-ca10-4309-a32b-d383d80347c1
66 years old female - Fresh PBMCs (2 days post-intubation)
881fe679-c6e0-45a3-9427-c4e81be6921f
7,097
29f92179-ca10-4309-a32b-d383d80347c1
66 years old female - Fresh PBMCs (3 days post-intubation)
ea786a06-5855-48b7-80d7-0313a21a2044
4,792
29f92179-ca10-4309-a32b-d383d80347c1
74 years old female - Fresh PBMCs (8 days post-intubation)
50eb1e23-b8d4-4f76-a184-44e5541fa05a
4,755
29f92179-ca10-4309-a32b-d383d80347c1
82 years old female - Fresh PBMCs (1 day post-intubation)
8a554710-08bc-4005-87cd-da9675bdc2e7
4,232
29f92179-ca10-4309-a32b-d383d80347c1
A (Balanced) Bone Marrow Reference Map of Hematopoietic Development
cd2f23c1-aef1-48ae-8eb4-0bcf124e567d
263,159
f6c50495-3361-40ed-a819-fb9644396ed9
A Single-Cell Atlas of Human White Adipose Tissue
ca46ffe6-0a26-4d8d-82fa-81722daf1102
166,149
fe0e718d-2ee9-42cc-894b-0b490f437dfd
A molecular cell atlas of endocrine signalling in human neural organoids
64267fb5-7b70-4705-a13b-cc38966c22a8
163,714
2bebc4ae-69a2-4001-9d2f-091ec9b4020c
A molecular single-cell lung atlas of lethal COVID-19
d8da613f-e681-4c69-b463-e94f5e66847f
116,313
e4c9ed14-e560-4900-a3bf-b0f8d2ce6a10
A multi-tissue single-cell tumor microenvironment atlas
b617ee1b-f8c8-4de9-b82b-e803ab93550d
391,963
3f7c572c-cd73-4b51-a313-207c7f20f188
A total of 38,217 droplet-based single-nucleus transcriptomes profiled across 14 cell types in the frontal cortex
2f05ab20-a092-4bab-9276-3e0eb24e3fee
38,217
59c9ecfe-c47d-4a6a-bab0-895cc0c1942b
Airway
edc8d3fe-153c-4e3d-8be0-2108d30f8d70
236,977
03f821b4-87be-4ff4-b65a-b5fc00061da7
All
13149914-ea03-4f01-8bf6-b793b667127b
1,665,937
4d8fed08-2d6d-4692-b5ea-464f1d072077
All Cells
16023185-de21-4c0d-a9c8-73abdd52d142
370,115
4d82bd8e-8827-410b-8fc7-685b7dd92585
All annotated cells from infection 2
7f7faf6b-f11d-4f07-bc1c-188a4472748d
134,076
2a9a17c9-1f61-4877-b384-b8cd5ffa4085
All annotated cells from infection 3
7b55fe5c-d5c8-48e0-a1a3-54c5b9074f3f
125,530
2a9a17c9-1f61-4877-b384-b8cd5ffa4085
All annotated cells from infection 4
7c497c66-c2e2-4291-8b96-339e5e65f314
76,298
2a9a17c9-1f61-4877-b384-b8cd5ffa4085
All cell types of human eye
e6dad530-418b-47f9-af6e-472e56a7b314
100,055
939769a8-d8d2-4d01-abfc-55699893fd49
All cells and nuclei
093d3bfe-6f0f-4ac0-a7a1-829f94d0a49f
193,108
c1241244-b22d-483d-875b-75699efb9f3c
All cells from human liver dataset
e84f2780-51e8-4cfa-8aa0-13bbfef677c7
167,598
74e10dc4-cbb2-4605-a189-8a1cd8e44d8c
All cells types from snRNA-seq of human primary sclerosing cholangitis patients and healthy controls
1873a18a-66fd-4a4d-8277-a872c93f5b59
105,780
0c8a364b-97b5-4cc8-a593-23c38c6f0ac5
All donors all cell states (in vivo)
74cff64f-9da9-4b2a-9b3b-8a04a1598040
325,665
e2c257e7-6f79-487c-b81c-39451cd4ab3c
All major cell types in adult human retina
0129dbd9-a7d3-4f6b-96b9-1da155a93748
244,474
af893e86-8e9f-41f1-a474-ef05359b1fb7
All — Cells of the adult human heart
d4e69e01-3ba2-4d6b-a15d-e7048f78f22e
486,134
b52eb423-5d0d-4645-b217-e1c6d38b2e72
All-snRNA-Spatial multi-omic map of human myocardial infarction
1c739a3e-c3f5-49d5-98e0-73975e751201
191,795
8191c283-0816-424b-9b61-c3e1d6258a77
An Integrated Single Cell Meta-atlas of Human Periodontitis
9fcb0b73-c734-40a5-be9c-ace7eea401c9
105,918
71f4bccf-53d4-4c12-9e80-e73bfb89e398
An integrated cell atlas of the human lung in health and disease (full)
9f222629-9e39-47d0-b83f-e08d610c7479
2,282,447
6f6d381a-7701-4781-935c-db10d30de293
Anomalous Epithelial Variations and Ectopic Inflammatory Response in Chronic Obstructive Pulmonary Disease
8fbed309-d3d4-441b-b3ff-e2dcbcec2d35
57,918
dc4cd1f7-667a-4c29-ae77-9401b9700d7f
BCC and Normal - scRNA-seq data
e7c5ba7e-4be0-4696-af50-a07d0dc7aac5
152,189
34f12de7-c5e5-4813-a136-832677f98ac8
Bipolar cells of the human fovea and peripheral retina
8623d55f-d91c-41c2-ae68-ed2072fd268d
25,908
1d1c7275-476a-49e2-9022-ad1b1c793594
Bronchial scRNA-Seq Dataset
d2bc2703-a9b5-4949-b85d-61da7b9961b1
2,075
af500bec-a5d6-4569-9f50-4314f2e7a011
Bronchopulmonary dysplasia
d68a8b48-abf0-4bd5-8834-155d34ec448a
271,381
3a5dbf8a-9b3e-4309-b4c5-d8a024f83734
CAREBANK
8f4f8502-9170-4ac2-9707-3b6985ebfe5f
221,756
8c782494-01ed-491b-97b9-6f0d3b76c676
Cellular and transcriptional diversity over the course of human lactation
0920bcb8-4b3a-4e9d-a353-56f529fd3b32
48,478
e77163ca-8214-4e86-8b37-4f65a2ddae13
Central Cornea
a4157949-6f2a-40e2-b960-63f6e2bde918
37,485
63d03351-06be-478e-a0db-f7a653b6b19b
Colon
2872f4b0-b171-46e2-abc6-befcf6de6306
41,650
7681c7d7-0168-4892-a547-6f02a6430ace
Combined single cell and single nuclei RNA-Seq data - Heart Global
d567b692-c374-4628-a508-8008f6778f22
704,296
3116d060-0a8e-4767-99bb-e866badea1ed
DCM/ACM heart cell atlas: All cells
65badd7a-9262-4fd1-9ce2-eb5dc0ca8039
881,081
e75342a8-0f3b-4ec5-8ee1-245a23e0f7cb
Developing Human Atlas
9968be68-ab65-4a38-9e1a-c9b6abece194
155,232
dfc09a93-bce0-4c77-893d-e153d1b7f9fa
Dissection: Basal nuclei (BN) - Globus pallidus (GP) - External segment of globus pallidus - GPe
18500fcd-9960-49cb-8a8e-7d868dc14efe
50,830
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Body of hippocampus (HiB) - Rostral DG-CA4
715327a6-7978-4896-ba91-69d6b04dbbfb
40,191
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Caudal cingulate gyrus (CgGC) - A23
e5b1115b-a486-49bb-bda3-8261822836e0
35,359
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Myelencephalon (medulla oblongata) (Mo) - afferent nuclei of cranial nerves in medulla oblongata - MoAN
07b1d7c8-5c2e-42f7-9246-26f746cd6013
27,210
283d65eb-dd53-496d-adb7-7570c7caa443
Epithelial Compartment
ed880090-465d-4477-9d98-70838ca288e3
242,613
9432ae97-4803-4b9f-8f64-2b41e42ad3cb
Extended+ - 18485 genes
19053a82-9c89-4fb8-bd19-d7b1800b0b7b
1,596,200
f11cb29c-b546-4738-9bd8-66ea621a7bd5
Figure 1
5d3fc988-765d-48ba-bfb5-151ef2988cac
49,109
7dd599c5-d25d-40c0-b1a6-8789791ca808
Figure 1 - A cell atlas of human thymic development defines T cell repertoire formation
cda2c8cd-be1c-42e5-b2cd-162caa1c4ce7
255,901
de13e3e2-23b6-40ed-a413-e9e12d7d3910
Frozen samples (single nucleus)
34f5307e-7b4d-4a48-b68f-2ba844c6414b
394,534
a96133de-e951-4e2d-ace6-59db8b3bfb1d
Full Dataset
0a2d7e87-c3c0-4ed2-86df-ae18811fcc16
61,747
7c4552fd-8a6d-4da3-9854-2dfa8baca8bf
Full dataset of single-cell RNA-seq profiles from 9 developmental tissues across gestation (4-17 pcw)
fd072bc3-2dfb-46f8-b4e3-467cb3223182
908,046
b1a879f6-5638-48d3-8f64-f6592c1b1561
Global
1b9d8702-5af8-4142-85ed-020eb06ec4f6
329,762
62ef75e4-cbea-454e-a0ce-998ec40223d3
Global Atlas
de5416ef-bbfa-41f3-99d4-01a3554173f5
621,200
9432ae97-4803-4b9f-8f64-2b41e42ad3cb
HBCA - global
0ba636a1-4754-4786-a8be-7ab3cf760fd6
803,283
48259aa8-f168-4bf5-b797-af8e88da6637
HNOCA Extended: The Human Neural Organoid Atlas
d7f5d8d0-6150-48d7-b094-c34286ad11a1
1,920,454
de379e5f-52d0-498c-9801-0f850823c847
Healthy and IFALD pediatric and adult human liver tissue
84cfa5aa-a0d1-415e-ac47-eb66c9cf8170
81,001
ff69f0ee-fef6-4895-9f48-6c64a68c8289
Healthy human liver: integrated
ddb22b3d-a75c-4dd1-9730-dff7fc8ca530
73,295
44531dd9-1388-4416-a117-af0a99de2294
Heart
364bd0c7-f7fd-48ed-99c1-ae26872b1042
931,012
854c0855-23ad-4362-8b77-6b1639e7a9fc
Hippocampus
74014ef8-d2d0-4cbc-8ba2-037f30753ffd
676,845
854c0855-23ad-4362-8b77-6b1639e7a9fc
Human Fetal Retina Atlas
aecc2743-4ff2-4b55-ac8c-a1ff76fc4bb4
108,838
c11009b8-b113-4a99-9890-78b2f9df9d79
Human HYPOMAP single-nucleus data
a2c833f7-b7f1-4f4d-ad31-cae478b601b7
433,369
d0941303-7ce3-4422-9249-cf31eb98c480
Human Immune Health Atlas
e522d2cd-7927-4e59-a4ed-064009569279
1,821,725
77f9d7e9-5675-49c3-abed-ce02f39eef1b
Human Oligodendrocytes 10x scRNA-seq
5829c7ba-697f-418e-8b98-d605b192dc48
178,815
b0f0b447-ac37-45b0-b1bf-5c0b7d871120
Human abdominal subcutaneous and intraabdominal white adipose tissue - 22 integrated samples
9d8e5dca-03a3-457d-b7fb-844c75735c83
72,335
6b701826-37bb-4356-9792-ff41fc4c3161
Human dermal fibroblast atlas
a19d1667-a7b5-4556-9e5f-f9bfa690c0f1
108,440
3c4f0970-7614-43de-beb7-6128b3cb74ed
Human lymph nodes with partial T and B cell depletion
edbfa04a-f1dd-496a-8237-df11d70621ca
77,525
69f13fde-a4e8-4a32-8b5d-c657ae2f5e9a
Human muscle cells and nuclei
b3c9904b-2ffd-4038-8620-ee1c5b072e9c
183,161
2d40e6a7-f2fd-49ba-9db9-6b97e4c6dad5
Immune Compartment
5a9cfb44-494a-4540-8db8-7143b1bb5a6f
274,555
9432ae97-4803-4b9f-8f64-2b41e42ad3cb
Individual Single-Cell RNA-seq PBMC Data from Schulte-Schrepping et al.
5e717147-0f75-4de1-8bd2-6fda01b8d75f
90,957
b9fc3d70-5a72-4479-a046-c2cc1ab19efc
Integrated Single-nucleus and Single-cell RNA-seq of the Adult Human Kidney
0b75c598-0893-4216-afe8-5414cab7739d
304,652
bcb61471-2a44-4d00-a0af-ff085512674c
Integrated cancer cell-specific single-cell RNA-seq datasets of immune checkpoint blockade-treated patients
7b20c613-9add-43d1-87e9-defd3d9b9f8c
355,941
61e422dd-c9cd-460e-9b91-72d9517348ef
Large-scale single-cell analysis reveals critical immune characteristics of COVID-19 patients
9dbab10c-118d-496b-966a-67f1763a6b7d
1,462,702
0a839c4b-10d0-4d64-9272-684c49a2c8ba
Lens
489318a0-24c3-4f5c-b105-f084ed0ea026
13,900
63d03351-06be-478e-a0db-f7a653b6b19b
Liver
1d89d081-f43d-401a-be76-bd6ef9259f4e
259,678
854c0855-23ad-4362-8b77-6b1639e7a9fc
Lung Parenchyma
2672b679-8048-4f5e-9786-f1b196ccfd08
57,019
4d74781b-8186-4c9a-b659-ff4dc4601d91
MSK SPECTRUM – All cells
b252b015-b488-4d5c-b16e-968c13e48a2c
927,205
4796c91c-9d8f-4692-be43-347b1727f9d8
Mature kidney dataset: full
9ea768a2-87ab-46b6-a73d-c4e915f25af3
40,268
120e86b4-1195-48c5-845b-b98054105eec
Modeling Hepatoblastoma: Identification of Distinct Tumor Cell Populations and Key Genetic Mechanisms through Single Cell Sequencing
ec6ceff8-c8bc-488d-b6bf-30df2fa92169
67,110
a261413d-835b-4f1e-ab0c-dada55ea6afd
Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Entorhinal Cortex
2727d83a-0af0-443a-bff8-58dc7028289a
42,528
180bff9c-c8a5-4539-b13b-ddbc00d643e6
Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Superior frontal gyrus
6c600df6-ddca-4628-a8bb-1d6de1e3f9b4
63,608
180bff9c-c8a5-4539-b13b-ddbc00d643e6
Multiomics single-cell analysis of human pancreatic islets reveals novel cellular states in health and type 1 diabetes
37b21763-7f0f-41ae-9001-60bad6e2841d
69,645
51544e44-293b-4c2b-8c26-560678423380
Non-neuronal cells of the human fovea and peripheral retina
bc7260e0-54cf-4b0b-823d-93f5b850f757
22,125
1d1c7275-476a-49e2-9022-ad1b1c793594
Non-pregnant Uterus (Endometrium - All)
9ddea8d9-cc4c-420a-90f6-880996f808d4
100,307
32f2fd23-ec74-486f-9544-e5b2f41725f5
Olah et al (2020) Single-cell Human Microglia
a1b9c51e-a408-4f7f-bccb-abefe20ae2a5
16,245
fcb3d1c1-03d2-41ac-8229-458e072b7a1c
PBMC
2a498ace-872a-4935-984b-1afa70fd9886
422,220
03f821b4-87be-4ff4-b65a-b5fc00061da7
PERIHEART
f1606894-59df-4794-a37f-baa7c6fb6de1
392,819
8c782494-01ed-491b-97b9-6f0d3b76c676
Pancreas
31f657dc-1875-4c4b-a5ca-ce63b3ef3a82
121,916
854c0855-23ad-4362-8b77-6b1639e7a9fc
Pregnant Uterus (All)
5bc42b88-bb76-4954-927b-8bb7369adc64
70,325
a9254216-6cd8-4186-b32c-349363777584
Second Trimester Human Developing Brain Regions and Cortical Areas
ae4f8ddd-cac9-4172-9681-2175da462f2e
457,965
c8565c6a-01a1-435b-a549-f11b452a83a8
Single cell RNA sequencing of follicular lymphoma
99950e99-2758-41d2-b2c9-643edcdf6d82
137,147
968834a0-1895-40df-8720-666029b3bbac
Single cell RNA-seq of human heart cells
2e9d2f32-4cfb-49b5-b990-cbf4c241214e
49,359
20eea6c8-9d64-42c9-9b6f-c11b5249e0e9
Single cell analysis of mouse and human prostate reveals novel fibroblasts with specialized distribution and microenvironment interactions - All Human Cells
574e9f9e-f8b4-41ef-bf19-89a9964fd9c7
83,451
4b54248f-2165-477c-a027-dd55082e8818
Single nucleus transcriptomic atlas of human foetal tendon
f641d68a-e877-4bb8-afd7-b8fa3921d461
91,859
7b9ae565-a781-433d-98d4-430394e7802a
Single-cell analysis of prenatal and postnatal human cortical development
1a38e762-2465-418f-b81c-6a4bce261c34
709,372
bacccb91-066d-4453-b70e-59de0b4598cd
Single-cell atlas of 24 hormone therapy naive localised prostate cancers
881e0e6b-a185-45f1-9b56-81606e91e7ff
68,322
bdac7a53-fe34-4f04-8c46-f9bd5297c099
Single-cell atlas of peripheral immune response to SARS-CoV-2 infection
456e8b9b-f872-488b-871d-94534090a865
44,721
a72afd53-ab92-4511-88da-252fb0e26b9a
Single-cell eQTL mapping identifies cell type specific genetic control of autoimmune disease
3faad104-2ab8-4434-816d-474d8d2641db
1,248,980
dde06e0f-ab3b-46be-96a2-a8082383c4a1
Single-cell transcriptomes of the human skin reveal age-related loss of fibroblast priming
124744b8-4681-474a-9894-683896122708
15,457
c353707f-09a4-4f12-92a0-cb741e57e5f0
Single-cell transcriptomics of human T cells reveals tissue and activation signatures in health and disease
01209dce-3575-4bed-b1df-129f57fbc031
51,876
24d42e5e-ce6d-45ff-a66b-a3b3b715deaf
Single-nucleus RNA-seq of the Adult Human Kidney (Version 1.5)
a12ccb9b-4fbe-457d-8590-ac78053259ef
304,989
0f528c8a-a25c-4840-8fa3-d156fa11086f
Single-nucleus cross-tissue molecular reference maps to decipher disease gene function
4ed927e9-c099-49af-b8ce-a2652d069333
209,126
a3ffde6c-7ad2-498a-903c-d58e732f7470
Skeletal_muscle
15d374d6-0dfd-4d8e-ade7-81f73dc921ee
201,575
854c0855-23ad-4362-8b77-6b1639e7a9fc
Sound Life Older Adult Females, CMV-negative
3cb646ab-d411-4e5b-89eb-082a786c953b
1,350,748
e9360edf-b0b7-4e01-bce8-e596814f13e7
Sound Life Older Adult Females, CMV-positive
aa32098f-f7b0-43f2-a00a-601d190aae94
2,596,111
e9360edf-b0b7-4e01-bce8-e596814f13e7
Sound Life Older Adult Males, CMV-negative
47e00f43-6176-44a5-b4d1-f88a1920fcab
1,750,565
e9360edf-b0b7-4e01-bce8-e596814f13e7
Sound Life Older Adult Males, CMV-positive
0c0c49a2-b96b-432f-98a4-1decf9929149
1,322,061
e9360edf-b0b7-4e01-bce8-e596814f13e7
Sound Life Young Adult Females, CMV-negative
46104f0b-9af5-466a-ae0f-56b8dc1969a2
2,616,824
e9360edf-b0b7-4e01-bce8-e596814f13e7
Sound Life Young Adult Females, CMV-positive
0a8e3443-c3e2-4918-84db-0495657d9175
1,234,234
e9360edf-b0b7-4e01-bce8-e596814f13e7
Sound Life Young Adult Males, CMV-negative
420d0f5d-b7ba-4b1e-88d0-44e9f733febd
1,712,244
e9360edf-b0b7-4e01-bce8-e596814f13e7
Spatiotemporal analysis of human intestinal development at single-cell resolution: All cells
9d5df009-eb76-43a3-b6cd-22017cc53700
76,592
60358420-6055-411d-ba4f-e8ac80682a2e
Spleen
644a578d-ffdc-446b-9679-e7ab4c919c13
94,256
4d74781b-8186-4c9a-b659-ff4dc4601d91
Tabula Sapiens - All Cells
53d208b0-2cfd-4366-9866-c3c6114081bc
1,136,218
e5f58829-1a66-40b5-a624-9046778e74f5
Total - Cells of the human intestinal tract mapped across space and time
80a2c5b6-02e7-4fc0-9f12-179f5247c1bc
428,469
e33ffcd3-7cbf-4b8c-b0f4-85587ad5019a
Transcriptome of human posterior ocular segment
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139,978
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Whole Taxonomy - DLPFC: Seattle Alzheimer's Disease Atlas (SEA-AD)
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1,395,601
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Whole Taxonomy - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD)
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1,378,211
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human cHSPCs - Illumina
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495,763
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human cHSPCs - Ultima
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516,121
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human endoderm organoid cell atlas
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806,646
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multiplexed scRNA-seq of 1.2 million PBMCs from adult lupus samples
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1,263,676
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scRNA-seq data - all cells
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714,331
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scRNA-seq for GZMK+CD8+ T cells Target A Specific Acinar Cell Type in Sjögren’s Disease
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94,227
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scRNA-seq of human ocular anterior segment: trabecular meshwork and ciliary body
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332,995
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scRNA-seq of human ocular surface: cornea, limbus, sclera – fetal data included
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815,769
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scRNA-seq of human of the human retinal pigment epithelium and the choroid
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182,151
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snRNA-seq data - all cells
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117,346
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snRNA-seq of human ocular anterior segment: trabecular meshwork and ciliary body
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1,102,250
0cbf8ef8-87bd-4b51-8521-ec3f68183e11
snRNA-seq of human of the human retinal pigment epithelium and the choroid - fetal data included
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851,993
48c15b0c-6039-4e0f-9668-b6b3c0b830ad
snRNA-seq of human optic nerve and optic nerve head - all cells
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959,629
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snRNA-seq of human retina - all cells
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3,177,310
4c6eaf5c-6d57-4c76-b1e9-60df8c655f1e
snRNA-seq of human subcutaneous adipose tissue - all cells
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37,879
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snRNA-seq of human visceral adipose tissue - all cells
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83,731
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snRNA-seq of the human quadriceps tendon
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12,808
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thymus scRNA-seq atlas
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482,651
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