A multi-tissue single-cell tumor microenvironment atlas
b617ee1b-f8c8-4de9-b82b-e803ab93550d
391,963
3f7c572c-cd73-4b51-a313-207c7f20f188
A total of 38,217 droplet-based single-nucleus transcriptomes profiled across 14 cell types in the frontal cortex
2f05ab20-a092-4bab-9276-3e0eb24e3fee
38,217
59c9ecfe-c47d-4a6a-bab0-895cc0c1942b
Airway
edc8d3fe-153c-4e3d-8be0-2108d30f8d70
236,977
03f821b4-87be-4ff4-b65a-b5fc00061da7
All
13149914-ea03-4f01-8bf6-b793b667127b
1,665,937
4d8fed08-2d6d-4692-b5ea-464f1d072077
All Cells
16023185-de21-4c0d-a9c8-73abdd52d142
370,115
4d82bd8e-8827-410b-8fc7-685b7dd92585
All Cells - snRNA-seq
ac0c6561-7a48-4185-af6f-af799f699172
432,555
c53573b2-eff4-4c5e-9ad0-b24d422dfd9b
All annotated cells from infection 1
2ac76f1b-43ef-4271-8686-2f165570989f
48,226
2a9a17c9-1f61-4877-b384-b8cd5ffa4085
All annotated cells from infection 3
7b55fe5c-d5c8-48e0-a1a3-54c5b9074f3f
125,530
2a9a17c9-1f61-4877-b384-b8cd5ffa4085
All annotated cells from infection 4
7c497c66-c2e2-4291-8b96-339e5e65f314
76,298
2a9a17c9-1f61-4877-b384-b8cd5ffa4085
All cell types of human eye
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100,055
939769a8-d8d2-4d01-abfc-55699893fd49
All cells and nuclei
093d3bfe-6f0f-4ac0-a7a1-829f94d0a49f
193,108
c1241244-b22d-483d-875b-75699efb9f3c
All cells from human liver dataset
e84f2780-51e8-4cfa-8aa0-13bbfef677c7
167,598
74e10dc4-cbb2-4605-a189-8a1cd8e44d8c
All cells type from five healthy donors
8f3e7fcf-0b16-4a29-a5f1-a7a8b267d689
50,992
ab6823e0-506e-461b-b1f9-d30e69a01687
All major cell types in adult human retina
0129dbd9-a7d3-4f6b-96b9-1da155a93748
244,474
af893e86-8e9f-41f1-a474-ef05359b1fb7
Amacrine cells of the human fovea and peripheral retina
5cdbb2ea-c622-466d-9ead-7884ad8cb99f
13,607
1d1c7275-476a-49e2-9022-ad1b1c793594
An Integrated Single Cell Meta-atlas of Human Periodontitis
9fcb0b73-c734-40a5-be9c-ace7eea401c9
105,918
71f4bccf-53d4-4c12-9e80-e73bfb89e398
An integrated cell atlas of the human lung in health and disease (full)
9f222629-9e39-47d0-b83f-e08d610c7479
2,282,447
6f6d381a-7701-4781-935c-db10d30de293
Bronchopulmonary dysplasia
d68a8b48-abf0-4bd5-8834-155d34ec448a
271,381
3a5dbf8a-9b3e-4309-b4c5-d8a024f83734
CAREBANK
8f4f8502-9170-4ac2-9707-3b6985ebfe5f
221,756
8c782494-01ed-491b-97b9-6f0d3b76c676
CITEseq of JDM PBMCs
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105,827
c672834e-c3e3-49cb-81a5-4c844be4a975
COMBAT project: single cell gene expression data from COVID-19, sepsis and flu patient PBMCs
ebc2e1ff-c8f9-466a-acf4-9d291afaf8b3
836,148
8f126edf-5405-4731-8374-b5ce11f53e82
Cellular and transcriptional diversity over the course of human lactation
0920bcb8-4b3a-4e9d-a353-56f529fd3b32
48,478
e77163ca-8214-4e86-8b37-4f65a2ddae13
Ciliary Body
1196334f-a441-474a-95ee-400780941690
34,132
63d03351-06be-478e-a0db-f7a653b6b19b
Colon
2872f4b0-b171-46e2-abc6-befcf6de6306
41,650
7681c7d7-0168-4892-a547-6f02a6430ace
Combined samples
576f193c-75d0-4a11-bd25-8676587e6dc2
147,137
62e8f058-9c37-48bc-9200-e767f318a8ec
DCM/ACM heart cell atlas: All cells
65badd7a-9262-4fd1-9ce2-eb5dc0ca8039
881,081
e75342a8-0f3b-4ec5-8ee1-245a23e0f7cb
Dissection: Basal nuclei (BN) - Globus pallidus (GP) - Internal segment of globus pallidus - GPi
ca20e2ac-5676-4158-b5d0-0c2b15898b19
33,968
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Middle frontal gyrus (MFG) - A46
db1d2c1b-2ee1-45d5-9d53-69a327cd77e6
31,065
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Cerebral cortex (Cx) - Superior Temporal Gyrus - STG
88a01d4a-5197-45be-b5ae-e019aef43376
40,565
283d65eb-dd53-496d-adb7-7570c7caa443
Dissection: Primary auditory cortex(A1)
e2808a6e-e2ea-41b9-b38c-4a08f1677f02
139,054
d17249d2-0e6e-4500-abb8-e6c93fa1ac6f
Dissection: Primary somatosensory cortex (S1)
93cb76aa-a84b-4a92-8e6c-66a914e26d4c
153,159
d17249d2-0e6e-4500-abb8-e6c93fa1ac6f
Dissection: Primary visual cortex(V1)
8d1dd010-5cbc-43fb-83f8-e0de8e8517da
241,077
d17249d2-0e6e-4500-abb8-e6c93fa1ac6f
Epithelial Compartment
ed880090-465d-4477-9d98-70838ca288e3
242,613
9432ae97-4803-4b9f-8f64-2b41e42ad3cb
Extended+ - 18485 genes
19053a82-9c89-4fb8-bd19-d7b1800b0b7b
1,596,200
f11cb29c-b546-4738-9bd8-66ea621a7bd5
Fallopian tube RNA
90d4a63b-5c02-43eb-acde-c49345681601
60,574
d36ca85c-3e8b-444c-ba3e-a645040c6185
Fovea - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
babbf9f3-f482-45a5-ba76-c41f4c2f503e
19,768
2f4c738f-e2f3-4553-9db2-0582a38ea4dc
Fresh samples (single cell)
6c87755e-a671-41a8-9c7e-4e43b850a57b
157,531
a96133de-e951-4e2d-ace6-59db8b3bfb1d
Frontal cortex samples from C9-ALS, C9-ALS/FTD and age matched control brains
98f5d518-1e60-4307-b732-ab045cd3cbc2
160,658
aee9c366-f2fb-470b-8937-577d5d87d3fc
Frozen samples (single nucleus)
34f5307e-7b4d-4a48-b68f-2ba844c6414b
394,534
a96133de-e951-4e2d-ace6-59db8b3bfb1d
Global
1b9d8702-5af8-4142-85ed-020eb06ec4f6
329,762
62ef75e4-cbea-454e-a0ce-998ec40223d3
Global Atlas
de5416ef-bbfa-41f3-99d4-01a3554173f5
621,200
9432ae97-4803-4b9f-8f64-2b41e42ad3cb
HBCA - global
0ba636a1-4754-4786-a8be-7ab3cf760fd6
803,283
48259aa8-f168-4bf5-b797-af8e88da6637
HBCC_Cohort
5c97eeeb-7e52-44b3-b010-b832b1f5424c
1,486,324
84ce6837-548d-4a1f-919f-0bc0d9a3952f
HNOCA Extended: The Human Neural Organoid Atlas
d7f5d8d0-6150-48d7-b094-c34286ad11a1
1,920,454
de379e5f-52d0-498c-9801-0f850823c847
Heart
364bd0c7-f7fd-48ed-99c1-ae26872b1042
931,012
854c0855-23ad-4362-8b77-6b1639e7a9fc
Human CellCards Multi-Study CellRef 1.0 Atlas
eb499fd8-7000-419f-8854-926b9b61b11f
347,970
f86d6317-7215-409e-bfda-3f4ded3dadaa
Human DA Neurons 10x scRNA-seq
2856d06c-0ff9-4e01-bfc9-202b74d0b60f
22,048
b0f0b447-ac37-45b0-b1bf-5c0b7d871120
Human abdominal subcutaneous and intraabdominal white adipose tissue - 22 integrated samples
9d8e5dca-03a3-457d-b7fb-844c75735c83
72,335
6b701826-37bb-4356-9792-ff41fc4c3161
Human adult ureter
3e524d45-2265-4440-b903-3c30d51a0b17
30,942
af286675-7167-4816-a907-c72d41b73d37
Immune aging project - all cells
1b350d0a-4535-4879-beb6-1142f3f94947
1,281,499
cc431242-35ea-41e1-a100-41e0dec2665b
Interneuron maturation in the human entorhinal cortex
72822932-10f6-466f-baf3-a2c1d89364bc
20,470
cae8bad0-39e9-4771-85a7-822b0e06de9f
Krasnow Lab Human Lung Cell Atlas, 10X
8c42cfd0-0b0a-46d5-910c-fc833d83c45e
65,662
5d445965-6f1a-4b68-ba3a-b8f765155d3a
Lung
2f132ec9-24b5-422f-9be0-ccef03b4fe28
39,778
6ff3401b-d72c-4940-a00c-3f0792397082
Lung Parenchyma
2672b679-8048-4f5e-9786-f1b196ccfd08
57,019
4d74781b-8186-4c9a-b659-ff4dc4601d91
MSK SPECTRUM – All cells
b252b015-b488-4d5c-b16e-968c13e48a2c
927,205
4796c91c-9d8f-4692-be43-347b1727f9d8
MSSM_Cohort
37a17b78-4864-4a42-b67b-31c00962795a
4,140,453
84ce6837-548d-4a1f-919f-0bc0d9a3952f
Modeling Hepatoblastoma: Identification of Distinct Tumor Cell Populations and Key Genetic Mechanisms through Single Cell Sequencing
ec6ceff8-c8bc-488d-b6bf-30df2fa92169
67,110
a261413d-835b-4f1e-ab0c-dada55ea6afd
Molecular characterization of selectively vulnerable neurons in Alzheimer’s Disease: Superior frontal gyrus
6c600df6-ddca-4628-a8bb-1d6de1e3f9b4
63,608
180bff9c-c8a5-4539-b13b-ddbc00d643e6
Nasal scRNA-Seq Dataset
e3cc5b85-62ec-4add-bee3-73c8fd11e59d
34,833
af500bec-a5d6-4569-9f50-4314f2e7a011
Non-pregnant Uterus (Endometrium - All)
9ddea8d9-cc4c-420a-90f6-880996f808d4
100,307
32f2fd23-ec74-486f-9544-e5b2f41725f5
Oligo - neocortex: Human variation study (HVS)
e34f3f89-3a48-4173-a06a-9e9803f2e2b9
57,855
35928d1c-36fc-4f93-9a8d-0b921ab41745
Organoid - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
7e7f63c5-d964-40be-83de-ecbcccafd233
43,857
2f4c738f-e2f3-4553-9db2-0582a38ea4dc
PERIHEART
f1606894-59df-4794-a37f-baa7c6fb6de1
392,819
8c782494-01ed-491b-97b9-6f0d3b76c676
Parkinson's disease
d3cb449b-c2b1-4b50-a7f1-21203535fe61
2,096,155
d5d0df8f-4eee-49d8-a221-a288f50a1590
Periphery - Cell Types of the Human Retina and Its Organoids at Single-Cell Resolution
ccfdcad0-7104-46b9-addf-fd66a2a15907
34,723
2f4c738f-e2f3-4553-9db2-0582a38ea4dc
Photoreceptor cells of the human fovea and peripheral retina
7b75b2c4-6d99-40be-9a61-391455d859e6
9,070
1d1c7275-476a-49e2-9022-ad1b1c793594
RADC_Cohort
5e57cd50-8e42-42d6-940d-5c1660d06864
693,682
84ce6837-548d-4a1f-919f-0bc0d9a3952f
Retina
d5c67a4e-a8d9-456d-a273-fa01adb1b308
19,694
3472f32d-4a33-48e2-aad5-666d4631bf4c
Single cell analysis of mouse and human prostate reveals novel fibroblasts with specialized distribution and microenvironment interactions - All Human Cells
574e9f9e-f8b4-41ef-bf19-89a9964fd9c7
83,451
4b54248f-2165-477c-a027-dd55082e8818
Single-cell RNA-seq analysis of Interstitial Lung Disease (ILD) subtypes
f14bc322-1322-4184-8d16-409557525ea5
471,905
07e12576-b41b-4350-adfc-059bfc4328ea
Single-cell analysis of prenatal and postnatal human cortical development
1a38e762-2465-418f-b81c-6a4bce261c34
709,372
bacccb91-066d-4453-b70e-59de0b4598cd
Single-cell atlas of peripheral immune response to SARS-CoV-2 infection
456e8b9b-f872-488b-871d-94534090a865
44,721
a72afd53-ab92-4511-88da-252fb0e26b9a
Single-cell eQTL mapping identifies cell type specific genetic control of autoimmune disease
3faad104-2ab8-4434-816d-474d8d2641db
1,248,980
dde06e0f-ab3b-46be-96a2-a8082383c4a1
Single-cell multiomic profiling of human lungs across age groups
3de0ad6d-4378-4f62-b37b-ec0b75a50d94
46,500
625f6bf4-2f33-4942-962e-35243d284837
Single-nucleus cross-tissue molecular reference maps to decipher disease gene function
4ed927e9-c099-49af-b8ce-a2652d069333
209,126
a3ffde6c-7ad2-498a-903c-d58e732f7470
Single-nucleus transcriptome data from the dlPFC: Human
3c361813-5d5e-4868-bfe5-e7591e7b5381
172,120
e1fa9900-3fc9-4b57-9dce-c95724c88716
Single-soma transcriptomics of tangle-bearing neurons in Alzheimer’s disease - Excitatory
85c60876-7f35-40c5-a256-7808d84c6ba5
96,129
b953c942-f5d8-434f-9da7-e726ba7c1481
Single-soma transcriptomics of tangle-bearing neurons in Alzheimer’s disease - Inhibitory
9813a1d4-d107-459e-9b2e-7687be935f69
23,197
b953c942-f5d8-434f-9da7-e726ba7c1481
Sound Life Older Adult Females, CMV-positive
aa32098f-f7b0-43f2-a00a-601d190aae94
2,596,111
e9360edf-b0b7-4e01-bce8-e596814f13e7
Sound Life Older Adult Males, CMV-negative
47e00f43-6176-44a5-b4d1-f88a1920fcab
1,750,565
e9360edf-b0b7-4e01-bce8-e596814f13e7
Sound Life Older Adult Males, CMV-positive
0c0c49a2-b96b-432f-98a4-1decf9929149
1,322,061
e9360edf-b0b7-4e01-bce8-e596814f13e7
Sound Life Young Adult Females, CMV-negative
46104f0b-9af5-466a-ae0f-56b8dc1969a2
2,616,824
e9360edf-b0b7-4e01-bce8-e596814f13e7
Subpallial germinal zones and the developing human entorhinal cortex
ecce9688-66ea-4600-98f7-84aed7421c01
124,917
cae8bad0-39e9-4771-85a7-822b0e06de9f
TI epithelial
fe4b89d5-461e-440c-a5a8-621b37b122c0
154,136
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
TI immune
a37f857c-779f-464e-9310-3db43a1811e7
201,072
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
Tabula Sapiens - All Cells
53d208b0-2cfd-4366-9866-c3c6114081bc
1,136,218
e5f58829-1a66-40b5-a624-9046778e74f5
Total - Cells of the human intestinal tract mapped across space and time
80a2c5b6-02e7-4fc0-9f12-179f5247c1bc
428,469
e33ffcd3-7cbf-4b8c-b0f4-85587ad5019a
UMAP of Cancer Data integration
7bb64315-9e5a-41b9-9235-59acf9642a3e
293,823
a18474f4-ff1e-4864-af69-270b956cee5b
Whole Taxonomy - DLPFC: Seattle Alzheimer's Disease Atlas (SEA-AD)
6f7fd0f1-a2ed-4ff1-80d3-33dde731cbc3
1,395,601
1ca90a2d-2943-483d-b678-b809bf464c30
Whole Taxonomy - MTG: Seattle Alzheimer's Disease Atlas (SEA-AD)
c2876b1b-06d8-4d96-a56b-5304f815b99a
1,378,211
1ca90a2d-2943-483d-b678-b809bf464c30
colon epithelial
5ce42b38-d867-487f-9b40-e8bb00b21d0b
97,788
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
colon immune
518d9049-2a76-44f8-8abc-1e2b59ab5ba1
152,509
5c868b6f-62c5-4532-9d7f-a346ad4b50a7
human cHSPCs - Illumina
d9f3a82c-24bb-4277-b715-8ec92a33dd32
495,763
5542eeb0-96ef-4ab9-95ea-eb6abc178461
human cHSPCs - Ultima
4a5b00e0-1ba3-4fd4-af89-d3512eb20720
516,121
5542eeb0-96ef-4ab9-95ea-eb6abc178461
progressive_plasticity_during_crc_metastasis_epithelial
829a3cd1-a466-49f1-b2e9-d3f6b7f392e2
47,107
1cbfb478-2c7f-4d15-b522-9f74e9fe52a8
scRNA-seq analysis of human fallopian tubes in healthy Vs. hydrosalphinx states
b693123e-95e6-4331-8b50-f367489a767e
77,536
fc77d2ae-247d-44d7-aa24-3f4859254c2c
scRNA-seq data - all cells
842c6f5d-4a94-4eef-8510-8c792d1124bc
714,331
4195ab4c-20bd-4cd3-8b3d-65601277e731
scRNA-seq of human ocular anterior segment: trabecular meshwork and ciliary body
8560f809-5794-484e-9152-b63efa91d134
332,995
0cbf8ef8-87bd-4b51-8521-ec3f68183e11
scRNA-seq of human ocular surface: cornea, limbus, sclera – fetal data included
8ef06ea4-8d0f-4303-a652-7d4604402b1f
815,769
0f7d022a-46c7-4e64-be4c-e34adbb78089
scRNA-seq of human of the human retinal pigment epithelium and the choroid
5ed90bc0-12f3-4354-b314-0ce0dbb96458
182,151
48c15b0c-6039-4e0f-9668-b6b3c0b830ad
scRNA-seq of human retina - all cells
be41a86a-b606-4b1c-8055-32f334898775
265,767
4c6eaf5c-6d57-4c76-b1e9-60df8c655f1e
scRNA-seq of lung biopsies from six human lung transplant cases
429d21fd-bb9a-4abf-922b-c15138524bdd
108,613
9f29fcd0-7075-4420-bd61-e2ec1aebad89
snRNA-seq of all cells in high-risk Neuroblastoma before and after chemotherapy
afae4675-434d-4e89-b5ce-2854c9dc38a3
372,619
cee845e3-ec04-4781-9e2a-28734bb4f7ba
snRNA-seq of human ocular anterior segment: trabecular meshwork and ciliary body
978a566a-dc27-478d-b306-26daba116c1f
1,102,250
0cbf8ef8-87bd-4b51-8521-ec3f68183e11
snRNA-seq of human of the human retinal pigment epithelium and the choroid - fetal data included
1a9f3b38-b86d-416d-bbdc-9058ad3ff42d
851,993
48c15b0c-6039-4e0f-9668-b6b3c0b830ad
snRNA-seq of human optic nerve and optic nerve head - all cells
3c364ffe-d599-44d5-a77f-6c5fd7038cf6
959,629
05e3d0fc-c9dd-4f14-9163-2b242b3bb5c2
snRNA-seq of human retina - all cells
d6505c89-c43d-4c28-8c4f-7351a5fd5528
3,177,310
4c6eaf5c-6d57-4c76-b1e9-60df8c655f1e
snRNA-seq of human subcutaneous adipose tissue - all cells
821a8e3e-87ec-41ee-bd69-cd4377057d38
37,879
ba84c7ba-8d8c-4720-a76e-3ee37dc89f0b
snRNA-seq of human visceral adipose tissue - all cells
96baf2e0-60c5-48cf-b1d1-cba657851507
83,731
ba84c7ba-8d8c-4720-a76e-3ee37dc89f0b